{"id":3884,"date":"2024-10-02T14:51:51","date_gmt":"2024-10-02T05:51:51","guid":{"rendered":"https:\/\/bdsl.jbnu.ac.kr\/blog\/?p=3884"},"modified":"2024-10-02T15:05:41","modified_gmt":"2024-10-02T06:05:41","slug":"%eb%8d%b0%ec%9d%b4%ed%84%b0%eb%b2%a0%ec%9d%b4%ec%8a%a4-%ec%82%ac%ec%9a%a9-%ec%8b%a4%ec%8a%b5-fireprotdb","status":"publish","type":"post","link":"https:\/\/bdsl.jbnu.ac.kr\/blog\/%eb%8d%b0%ec%9d%b4%ed%84%b0%eb%b2%a0%ec%9d%b4%ec%8a%a4-%ec%82%ac%ec%9a%a9-%ec%8b%a4%ec%8a%b5-fireprotdb\/","title":{"rendered":"\ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc0ac\uc6a9 \uc2e4\uc2b5 &#8211; FireProtDB"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Introduction <\/h2>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">FireProtDB\ub294 \ub2e8\ubc31\uc9c8 \uc5f4\uc548\uc815\uc131\uc5d0 \ub300\ud55c \uc815\ubcf4\ub97c \uc218\uc9d1\ud558\uace0 \uc815\ub9ac\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc774\ub2e4. <\/p>\n\n\n\n<p class=\"wp-block-paragraph\">\uc774 \ub370\uc774\ud130 \ubca0\uc774\uc2a4\ub97c \uc774\uc6a9\ud558\uc5ec program (Python)\uc744 \uc774\uc6a9\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc811\uadfc \ubc0f \ud65c\uc6a9 \ubc29\ubc95\uc744 \ud559\uc2b5\ud55c\ub2e4.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">\uc2e4\uc2b5 code <\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">\uc544\ub798 code\ub294 FireProtDB\uc5d0 \uc811\uc18d\ud574\uc11c Tm \uac12\uacfc ddG \uac12\uc744 \uac00\uc838\uc624\uace0, \uac01 \uac12\uc758 \ubd84\ud3ec\ub97c \ub098\ud0c0\ub0b4\ub294 \ud504\ub85c\uadf8\ub7a8\uc774\ub2e4. \uc774\uc640 \uac19\uc774 \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc640 \ud504\ub85c\uadf8\ub7a8\uc744 \uc5f0\ub3d9\ud558\uc5ec \ub370\uc774\ud130 \ubd84\uc11d\uc744 \uc9c4\ud589\ud560 \uc218 \uc788\ub2e4.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">1. Load libraries <\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">\ub370\uc774\ud130 \ubd84\uc11d\uc5d0 \uc0ac\uc6a9\ud560 \ud504\ub85c\uadf8\ub7a8(library)\ub97c \uc77d\ub294\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">import mysql.connector\nimport pandas as pd\nimport seaborn as sns\nfrom scipy.stats import spearmanr<\/code><\/pre>\n\n\n\n<h3 class=\"wp-block-heading\">2. Database\uc5d0 \uc5f0\uacb0\ud55c\ub2e4.<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">MySQL\uc744 \uc774\uc6a9\ud558\uc5ec FireProtDB\uc5d0 \uc811\uc18d\ud55c\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">connection = mysql.connector.connect(\n    host='203.254.133.24',\n    user='root',\n    port='8888',\n    password='&lt;\ube44\ubc00\ubc88\ud638&gt;',\n    database='fireprotdb'\n)\ncursor = connection.cursor()\n<\/code><\/pre>\n\n\n\n<p class=\"wp-block-paragraph\">(*) &lt;\ube44\ubc00\ubc88\ud638&gt;\ub294 \uc218\uc5c5\uc5d0\uc11c \ubd80\uc5ec\ud55c \ube44\ubc00\ubc88\ud638\ub85c \ub300\uccb4\ud558\uc5ec \uc785\ub825\ud55c\ub2e4.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">3. SQL \uba85\ub839 \uc2e4\ud589<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">SQL \uba85\ub839\uc5b4\ub97c \uc791\uc131\ud55c\ub2e4. <code>mutation_experiments<\/code>  table \uc5d0\uc11c <code>tm<\/code>, <code>ddg<\/code> \uac12\uc744 \uc120\ud0dd\ud55c\ub2e4.<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">sql = 'SELECT tm, ddg FROM mutation_experiments'\ncursor.execute(sql)\n<\/code><\/pre>\n\n\n\n<h3 class=\"wp-block-heading\">4. \uc120\ud0dd\ud55c \uac12\uc744 dataframe\uc73c\ub85c \uc800\uc7a5<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">MySQL server\ub85c \ubd80\ud130 \ubc1b\uc740 \uac12\uc744 table \ud615\ud0dc\ub85c \uc815\ub9ac\ud55c\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">ddg_list = []\nfor e in cursor.fetchall():\n    try: \n        ddg_list.append([float(e[0]), float(e[1])])\n    except:\n        pass\n\nddg_tm = pd.DataFrame(ddg_list, columns=['tm', 'ddg'])<\/code><\/pre>\n\n\n\n<h3 class=\"wp-block-heading\">5. Tm \uac12\uacfc ddG \uac12 \ubd84\ud3ec\ub3c4 \uc791\uc131<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\"><code>seaborn<\/code> \ud504\ub85c\uadf8\ub7a8\uc744 \uc774\uc6a9\ud558\uc5ec Tm \uac12\uacfc ddG \uac12\uc5d0 \ub300\ud55c histogram\uc744 \uadf8\ub9b0\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">sns.histplot(ddg_tm['tm'])<\/code><\/pre>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">sns.histplot(ddg_tm['ddg'])<\/code><\/pre>\n\n\n\n<h3 class=\"wp-block-heading\">6. Tm \uac12\uacfc ddG \uac12\uc758 \ubd84\ud3ec <\/h3>\n\n\n\n<p class=\"wp-block-paragraph\"><code>seaborn<\/code> \ud504\ub85c\uadf8\ub7a8\uc744 \uc774\uc6a9\ud558\uc5ec Tm \uac12\uacfc ddG \uac12\uc744 \ub3d9\uc2dc\uc5d0 \ud45c\ud604\ud55c\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">sns.scatterplot(ddg_tm, x='tm', y='ddg')\n<\/code><\/pre>\n\n\n\n<h3 class=\"wp-block-heading\">7. \ubcc0\uc218 \uac04\uc758 \ud1b5\uacc4\uc801 \uad00\ub828\uc131 \ud45c\uae30<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\"><code>spearmanr<\/code> \ud568\uc218\ub97c \uc774\uc6a9\ud558\uc5ec Tm \uac12\uacfc ddG \uac12\uc758 correlation coefficient\ub97c \uacc4\uc0b0\ud558\uace0, \uc774\ub4e4\uc758 \ud1b5\uacc4\uc801 \uc720\uc758\uc131\uc744 \uacc4\uc0b0\ud55c\ub2e4. <\/p>\n\n\n\n<pre class=\"wp-block-code\"><code lang=\"python\" class=\"language-python\">rho, pv = spearmanr(ddg_tm['tm'], ddg_tm['ddg'])\nprint(f'rho: {rho}')\nprint(f'P-value: {pv}')<\/code><\/pre>\n","protected":false},"excerpt":{"rendered":"<p>Introduction FireProtDB\ub294 \ub2e8\ubc31\uc9c8 \uc5f4\uc548\uc815\uc131\uc5d0 \ub300\ud55c \uc815\ubcf4\ub97c \uc218\uc9d1\ud558\uace0 \uc815\ub9ac\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc774\ub2e4. \uc774 \ub370\uc774\ud130 \ubca0\uc774\uc2a4\ub97c \uc774\uc6a9\ud558\uc5ec program (Python)\uc744 \uc774\uc6a9\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc811\uadfc \ubc0f \ud65c\uc6a9 \ubc29\ubc95\uc744 \ud559\uc2b5\ud55c\ub2e4. \uc2e4\uc2b5 code \uc544\ub798 code\ub294 FireProtDB\uc5d0 \uc811\uc18d\ud574\uc11c Tm \uac12\uacfc ddG \uac12\uc744 \uac00\uc838\uc624\uace0, \uac01 \uac12\uc758 \ubd84\ud3ec\ub97c \ub098\ud0c0\ub0b4\ub294 \ud504\ub85c\uadf8\ub7a8\uc774\ub2e4. \uc774\uc640 \uac19\uc774 \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc640 \ud504\ub85c\uadf8\ub7a8\uc744 \uc5f0\ub3d9\ud558\uc5ec \ub370\uc774\ud130 \ubd84\uc11d\uc744 \uc9c4\ud589\ud560 \uc218 \uc788\ub2e4. 1. Load libraries \ub370\uc774\ud130 \ubd84\uc11d\uc5d0 \uc0ac\uc6a9\ud560 \ud504\ub85c\uadf8\ub7a8(library)\ub97c [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":"","_members_access_role":[],"_members_access_error":""},"categories":[1],"tags":[],"class_list":["post-3884","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v28.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>\ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc0ac\uc6a9 \uc2e4\uc2b5 - FireProtDB - Biomedical Data Science Laboratory<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bdsl.jbnu.ac.kr\/blog\/\ub370\uc774\ud130\ubca0\uc774\uc2a4-\uc0ac\uc6a9-\uc2e4\uc2b5-fireprotdb\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"\ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc0ac\uc6a9 \uc2e4\uc2b5 - FireProtDB - Biomedical Data Science Laboratory\" \/>\n<meta property=\"og:description\" content=\"Introduction FireProtDB\ub294 \ub2e8\ubc31\uc9c8 \uc5f4\uc548\uc815\uc131\uc5d0 \ub300\ud55c \uc815\ubcf4\ub97c \uc218\uc9d1\ud558\uace0 \uc815\ub9ac\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc774\ub2e4. \uc774 \ub370\uc774\ud130 \ubca0\uc774\uc2a4\ub97c \uc774\uc6a9\ud558\uc5ec program (Python)\uc744 \uc774\uc6a9\ud55c \ub370\uc774\ud130\ubca0\uc774\uc2a4 \uc811\uadfc \ubc0f \ud65c\uc6a9 \ubc29\ubc95\uc744 \ud559\uc2b5\ud55c\ub2e4. \uc2e4\uc2b5 code \uc544\ub798 code\ub294 FireProtDB\uc5d0 \uc811\uc18d\ud574\uc11c Tm \uac12\uacfc ddG \uac12\uc744 \uac00\uc838\uc624\uace0, \uac01 \uac12\uc758 \ubd84\ud3ec\ub97c \ub098\ud0c0\ub0b4\ub294 \ud504\ub85c\uadf8\ub7a8\uc774\ub2e4. \uc774\uc640 \uac19\uc774 \ub370\uc774\ud130\ubca0\uc774\uc2a4\uc640 \ud504\ub85c\uadf8\ub7a8\uc744 \uc5f0\ub3d9\ud558\uc5ec \ub370\uc774\ud130 \ubd84\uc11d\uc744 \uc9c4\ud589\ud560 \uc218 \uc788\ub2e4. 1. 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